マメ科植物と根粒菌の「共生コード」を解明 ― 植物と細菌の相互認識メカニズムを明らかに

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2026-01-09 中国科学院(CAS)

中国科学院分子植物科学卓越イノベーションセンター(CEMPS)の研究チームは、マメ科植物と根粒菌が共生相手を識別する分子機構を解明した。研究では、エンドウ根粒菌の転写因子NodDとフラボノイド化合物ヘスペレチンの複合体について、世界で初めて高分解能の結晶構造を決定し、NodDがフラボノイドを特異的に認識する仕組みを明らかにした。NodDは単量体内部と二量体界面の2か所の結合ポケットを用いてリガンドを結合し、特定のアミノ酸残基が活性化と選択性を規定していることが示された。さらに、エンドウとアルファルファ由来のNodDを比較し、わずかな配列差がフラボノイド応答性の違いを生むことを突き止めた。本成果は、植物と根粒菌が「二重の鍵と鍵穴」によって共生相手を選別する進化的仕組みを説明し、作物別に最適化した窒素固定系の設計や、非マメ科作物への応用に道を開く。

<関連情報>

フラボノイドによる根粒菌NodDの結合と特異的活性化の分子基盤 The molecular basis of the binding and specific activation of rhizobial NodD by flavonoids

Yiting Ruan, Shangzhi Dong, Suyu Jiang, Yisheng Wang, […] , and Jeremy D. Murray
Science  Published:8 Jan 2026
DOI:https://doi.org/10.1126/science.aec3061

Editor’s summary

Legume plants such as pea and alfalfa form an ecologically and agriculturally important symbiotic relationship with nitrogen-fixing soil bacteria called rhizobia. This interaction begins when the plant releases specific flavonoids into the soil that are selectively recognized by its symbiotic partners. The bacteria perceive these signals and produce a countersignal, initiating a chemical dialogue. This communication allows the bacteria to enter the plant’s roots and provide fixed nitrogen, showcasing a highly specific form of plant-microbe communication. Ruan et al. describe the molecular basis of how the rhizobia are able to discriminate between different flavonoids to recognize the appropriate host. —Stella M. Hurtley

Abstract

The specific partnership between legumes and rhizobia relies on a chemical dialogue. Plant flavonoids activate the bacterial transcription factor NodD, which triggers production of Nod factors that are recognized by the plant. Structural studies of the Pisum sativum (pea) symbiont Rhizobium leguminosarum NodD revealed two pockets that are essential for its activation by flavonoids. Comparative studies with NodD1 of Sinorhizobium medicae, the symbiont of Medicago truncatula, revealed that this specificity is determined by the shape of the pocket and by specific amino acids. A chimeric NodD containing the flavonoid recognition residues from S. medicae NodD1 in the R. leguminosarum NodD backbone was sufficient to complement nitrogen fixation in M. truncatula by an S. medicae nodD1 mutant, confirming the critical role of flavonoid recognition in host range.

細胞遺伝子工学
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