複雑な酵素反応を数理モデルで解析~熱力学と速度論を駆使した新しい理論で酵素電極反応のメカニズムに迫る~

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2025-04-22 京都大学

京都大学の研究グループは、酢酸菌由来の酵素「アルデヒド脱水素酵素(ALDH)」の膜結合サブユニットが、酵素の触媒活性を向上させることを明らかにした。特に、電子を電極に直接伝える「直接電子移動型酵素電極反応(DET型反応)」におけるALDHの役割に着目し、膜結合の有無で反応性が変化するメカニズムを数理モデル(熱力学・速度論)で解析。これにより、酵素電極反応の理解とバイオセンサーや燃料電池などの応用研究に貢献する成果となった。

<関連情報>

線形自由エネルギー関係に基づく切断型アルデヒド脱水素酵素の触媒反応の定量的解明 Quantitative Elucidation of Catalytic Reaction of Truncated Aldehyde Dehydrogenase Based on Linear Free Energy Relationship

Konatsu Ichikawa,Taiki Adachi,Yuki Kitazumi,Osamu Shirai,and Keisei Sowa
ACS Catalysis  Published: April 18, 2025
DOI:https://doi.org/10.1021/acscatal.4c07978

Abstract

複雑な酵素反応を数理モデルで解析~熱力学と速度論を駆使した新しい理論で酵素電極反応のメカニズムに迫る~

Some oxidoreductases can communicate directly and electrically with electrodes; this process is called direct electron transfer (DET)-type bioelectrocatalysis. Understanding its detailed mechanisms is essential for developing and improving DET-based bioelectrochemical devices. In this study, we investigated the pH dependence of kinetic and thermodynamic characteristics of a variant of an aldehyde dehydrogenase (ALDH) without the cytochrome c subunit (ΔC_ALDH) and compared it with that of a wild-type recombinant ALDH (rALDH). Owing to the pronounced DET activity of ΔC_ALDH at multi-walled carbon nanotubes, the voltammograms were analyzed to obtain the enzymatic parameters. The potential difference between the electrode-active site of the enzyme and electron donor (E°′EE°′D) and the limiting catalytic current density (jcat) exhibited an ideal linear free energy relationship (LFER), suggesting that the catalytic reaction of ΔC_ALDH was controlled by the thermodynamic driving force without any specific interactions. We also measured the ferricyanide reductase activity in solution (ksol) to investigate the effect of electron acceptors (electrode and ferricyanide) on the enzymatic properties. The ksol of ΔC_ALDH has a pH dependence similar to that of jcat; therefore, the experimental data were kinetically analyzed based on the LFER by considering the potential difference between the electron acceptor and electrode-active site of the enzyme (E°′AE°′E). By integrating the analytical results obtained from the DET-type acetaldehyde oxidation using an electrode and ferricyanide reduction in solution, the catalytic constant for the DET-type bioelectrocatalysis (kDET) and the surface concentration of the effective enzyme immobilized on the electrode (ΓE,eff) of ΔC_ALDH were calculated to be 5000 ± 2000 s–1 and 13 ± 7 pmol cm–2, respectively. This study achieved a detailed evaluation of the multi-step catalytic reactions of redox enzymes and can help elucidate the reaction mechanisms of DET-type bioelectrocatalysis.

生物工学一般
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