“細胞の履歴”を読み解く: 抗生物質パーシスタンスの多様な生存モード~細菌の”生き残り方”は一つじゃない~

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2025-05-16 東京大学

東京大学の研究チームは、独自開発のMCMAデバイスを用い、抗生物質パーシスタンスにおける細菌の生存戦略を一細胞レベルで解析。従来は成長停止状態の細胞が生存するとされていたが、本研究では通常分裂中の細胞も生き残ることが判明。さらに、薬剤投与前の栄養状態など環境履歴により生存モードが変化することも明らかに。抗生物質耐性の理解に新たな視点を提供する重要な成果となった。

“細胞の履歴”を読み解く: 抗生物質パーシスタンスの多様な生存モード~細菌の”生き残り方”は一つじゃない~
MCMAデバイスと生存細胞の例

<関連情報>

抗菌薬持続性における多様な生存様式を明らかにする難分解性細胞履歴の観察 Observation of persister cell histories reveals diverse modes of survival in antibiotic persistence

Miki Umetani,Miho Fujisawa,Reiko Okura,Takashi Nozoe,Shoichi Suenaga,Hidenori Nakaoka,Edo Kussell,Yuichi Wakamoto
eLife  Published:May 13, 2025
DOI:https://doi.org/10.7554/eLife.79517

Abstract

Bacterial persistence is a phenomenon in which a small fraction of isogenic bacterial cells survives a lethal dose of antibiotics. Although the refractoriness of persistent cell populations has classically been attributed to growth-inactive cells generated before drug exposure, evidence is accumulating that actively growing cell fractions can also generate persister cells. However, single-cell characterization of persister cell history remains limited due to the extremely low frequencies of persisters. Here, we visualize the responses of over one million individual cells of wildtype Escherichia coli to lethal doses of antibiotics, sampling cells from different growth phases and culture media into a microfluidic device. We show that when cells sampled from exponentially growing populations were treated with ampicillin or ciprofloxacin, most persisters were growing before antibiotic treatment. Growing persisters exhibited heterogeneous survival dynamics, including continuous growth and fission with L-form-like morphologies, responsive growth arrest, or post-exposure filamentation. Incubating cells under stationary phase conditions increased both the frequency and the probability of survival of non-growing cells to ampicillin. Under ciprofloxacin, however, all persisters identified were growing before the antibiotic treatment, including samples from post-stationary phase culture. These results reveal diverse persister cell dynamics that depend on antibiotic types and pre-exposure history.

Editor’s evaluation

The manuscript reports on the single cell evaluation of E. coli persisters under antibiotics. Typically, persisters are rare cells and only very few have been directly observed in non mutated strains. Therefore, the current work adds an important contribution by mapping a higher numbers of persisters and by convincingly identifying different persister phenotypes. The main conclusions are along previous reports, namely that persisters under β-lactams are mainly non-growing cells from stationary conditions, but if cultures are carefully kept away from stationary phase conditions, the few residual persisters observed in this study display different phenotypes involving growing cells and L-forms.

生物工学一般
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