サンゴ‐褐虫藻‐細菌ホロビオントにおける単一細胞代謝相互作用のマッピング(Scientists Map Single-Cell Metabolic Interactions Across Coral-Symbiodiniaceae-Bacterial Holobiont)

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2026-03-17 中国科学院(CAS)

中国科学院青島生物エネルギー・プロセス研究所(QIBEBT)と海南大学の研究チームは、サンゴ・共生藻(Symbiodiniaceae)・細菌からなるホロビオントにおける単一細胞レベルの代謝相互作用を可視化する新手法を開発した。ラマン分光と同位体標識(^13C、^15N)を組み合わせ、炭素・窒素の移動と再循環を定量化し、初のin situ代謝アトラスを構築。耐熱性共生藻ではタンパク質や脂質関連代謝が強化され、細菌との組み合わせにより代謝交換様式が異なることが判明した。また、白化時の代謝変化や回復過程も追跡し、特定の共生組み合わせが回復を部分的に改善する可能性を示した。本成果はサンゴ白化対策や生態系保全に貢献する。

サンゴ‐褐虫藻‐細菌ホロビオントにおける単一細胞代謝相互作用のマッピング(Scientists Map Single-Cell Metabolic Interactions Across Coral-Symbiodiniaceae-Bacterial Holobiont)
Metaramanome enables a deeper understanding of metabolic interactions within coral-Symbiodiniaceae-bacteria relationships (Image by WANG Xiaohang)

<関連情報>

単一細胞ラマン分光メタボロミクスによるサンゴホロビオントの再構築と、共生細菌、細菌、サンゴ間の因果関係の解明 Reconstruction of coral holobionts and elucidation of the causal relationships among symbiodiniaceae, bacteria, and coral through single-cell raman spectroscopy metabolomics

Yang Shu,Yuehui He,Tianhui Chen,Yuanyuan Zhou,Yawen Liu,Pengcheng Fu &Jian Xu
Microbiome  Published:27 February 2026
DOI:https://doi.org/10.1186/s40168-026-02338-4  Unedited version

Abstract

Background

The global decline of coral reefs underscores the urgency of understanding how corals enhance resilience in stressful environmental conditions. As metaorganisms, or holobionts, corals rely on dynamic interactions with their associated microbial communities, with bacterial restructuring proposed as a potential mechanism of holobiont adaptation. Here, we reconstructed coral symbiosis in the bleached tissues of Acropora hyacinthus by introducing beneficial bacteria and thermally domesticated Symbiodiniaceae to assess their roles in bleaching recovery. Raman spectroscopy metabolomics (RS metabolomics) enables in situ detection, providing temporal evidence of metabolic exchange within the tripartite relationship among corals, Symbiodiniaceae, and associated bacteria.

Results

This study highlights the potential of acclimation-based approaches in the development of thermotolerant Symbiodiniaceae strains. Furthermore, by manipulating this bacterial community, we identified a bacterium that enhances the thermal and light tolerances of acclimated Symbiodiniaceae, offering new insights into coral reef homeostasis strategies. Our results also indicate that the introduction of beneficial bacterial strains and thermotolerant Symbiodiniaceae, including proteins, lipids, and carbohydrates, increased nutrient levels in the coral host.

Conclusions

This work introduces a microbial-assisted holobiont reconstitution framework that advances understanding of cross-kingdom metabolic integration and offers a mechanistic basis for engineering coral resilience under climate stress. The findings could provide insights into leveraging beneficial microbiota to mitigate thermal-induced coral bleaching, ultimately informing conservation strategies for marine ecosystems.

生物化学工学
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