骨類似鉱物の構造解析にスーパーコンピュータを活用(UC San Diego Researchers Use SDSC’s Expanse to Better Understand Bone-Like Minerals)

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2026-07-30 カリフォルニア大学サンディエゴ校(UCSD)

米国カリフォルニア大学サンディエゴ校(UC San Diego)の研究チームは、サンディエゴ・スーパーコンピュータセンター(SDSC)のスーパーコンピュータ「Expanse」を用いて、骨や歯の主成分であるリン酸カルシウム鉱物「ヒドロキシアパタイト」の形成過程を原子レベルで解析した。ヒドロキシアパタイトは生体材料や人工骨、歯科材料として広く利用されているが、その結晶化メカニズムには未解明な点が多かった。研究では大規模分子動力学シミュレーションを実施し、水溶液中でカルシウムイオンとリン酸イオンが集合し、初期クラスターを形成して結晶へ成長する過程を詳細に再現した。これにより、結晶成長を左右する分子レベルの相互作用や安定化機構を明らかにし、生体鉱物化(バイオミネラリゼーション)の理解を深める成果を得た。今回の知見は、人工骨や歯科材料の性能向上に加え、骨再生医療やバイオマテリアル設計など幅広い医療・材料分野への応用が期待される。

骨類似鉱物の構造解析にスーパーコンピュータを活用(UC San Diego Researchers Use SDSC’s Expanse to Better Understand Bone-Like Minerals)
Hydroxyapatite is the primary inorganic component of bones and hard tissues, and highly relevant in a variety of medical applications. The incorporation of dopants into the calcium sites of this material introduces atomic defects that endow it with unique luminescent properties for bioimaging applications.

<関連情報>

Eu3+ドープヒドロキシアパタイトにおける電荷補償、構造応答、およびドーパント分布:密度汎関数理論による研究 Charge compensation, structural response, and dopant distribution in Eu3+-doped hydroxyapatite: A density functional theory study

J. Arturo García-Cortés, Fabián Martínez-Pallares, Manuel Herrera, Olivia A. Graeve
Journal of Solid State Chemistry  Available online 13 February 2026
DOI:https://doi.org/10.1016/j.jssc.2026.125894

Highlights

  • Incorporation of rare-earth dopants into hydroxyapatite introduces atomic defects.
  • Unique luminescent properties result from the presence of dopants.
  • These properties are potentially useful in bioimaging applications.
  • Substitution of Eu3+ for Ca2+ is charge compensated by the deprotonation of OH.
  • Variations in lattice parameters depend on the charge compensation mechanism.

Abstract

Hydroxyapatite (HAp) is the primary inorganic component of bones and hard tissues in mammals, and thus highly relevant in a variety of medical applications. The incorporation of dopants into HAp introduces atomic defects that endow it with unique luminescent properties, potentially useful for bioimaging. This study aims to deepen the understanding of the structure and energetics of europium-doped HAp through ab initio simulations at low dopant concentrations. Using density functional theory within the generalized gradient approximation, we conducted calculations on 352-atom supercells of both undoped and europium-doped HAp. We explored the behavior of trivalent europium (Eu3+) and its effect on the HAp crystal lattice, focusing on Eu/[Eu + Ca] atomic ratios up to 0.05. Our analysis of relative defect formation energies indicates that the substitution of Eu3+ for Ca2+ is charge compensated preferentially via the deprotonation of an OH group, leading to a homogeneous spatial distribution of Eu3+ ions within the HAp structure. In contrast, when calcium vacancies are utilized as an alternative charge compensation mechanism, the defects tend to distribute irregularly. Our results also highlight a preference for Eu3+ substitution at Ca(II) sites. Moreover, structure optimizations prove that the variations in lattice parameters of Eu3+-doped HAp with respect to pure HAp also depend on the charge compensation mechanism. The computed data align well with various experimental observations.

有機化学・薬学
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