植物が陸上で生き残るために進化したタンパク質を特定(Researchers identify protein that evolved to enable plants to thrive on land)

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2025-08-14 トロント大学(U of T)

トロント大学の研究チームは、約5億年前に進化し、植物が陸上で光合成できるようになったタンパク質「Shikimate kinase-like 1(SKL1)」を特定した。SKL1は全ての陸上植物に存在し、光合成に必要な葉緑体形成に不可欠で、水生藻類など陸上以前の植物にはない。研究ではゲノム解析とCRISPR編集を用い、コケ植物の一種であるタイ類でSKL1を欠損させると、花卉類と同様に白化し成長が阻害された。さらに、タイ類由来SKL1をSKL1欠損の花卉に導入すると、葉緑体形成が回復した。これはSKL1の機能が5億年にわたり保存されていることを示す。SKL1は現在の主要除草剤標的であるSKタンパク質から派生しており、種特異的に標的化できる持続可能な除草剤や光合成効率改善作物の開発に応用可能とされる。成果はMolecular Biology and Evolution誌に掲載。

植物が陸上で生き残るために進化したタンパク質を特定(Researchers identify protein that evolved to enable plants to thrive on land)
Normal and albino Arabidopsis seedlings, with the latter missing the activity of the SKL1 protein that enables plants to convert light into energy through photosynthesis (photo by Thanh Nguyen)

<関連情報>

シキミ酸キナーゼ様1は、陸上植物の葉緑体生物生成に寄与する古くから保存された役割を果たす Shikimate Kinase-Like 1 Participates in an Ancient and Conserved Role Contributing to Chloroplast Biogenesis in Land Plants

Michael Kanaris , Jonathan Lee , Belinda Chang , Dinesh Christendat
Molecular Biology and Evolution  Published:02 June 2025
DOI:https://doi.org/10.1093/molbev/msaf129

Abstract

Shikimate kinase-like 1 (SKL1) plays an essential role in chloroplast biogenesis in Arabidopsis thaliana whereby mutants present a pigment-defective phenotype. The inability to identify SKL1 in organisms predating land plants suggests an important role for this gene coinciding with the emergence of terrestrial plants. A role for SKL1 in chloroplast biogenesis has previously been determined in Arabidopsis; however, the biological function for SKL1 has not been established in early land plants. In the present study, we provided functional and evolutionary insights into the diversification of SKL1 in the early land plant Marchantia polymorpha. We identified the SK gene homologs common to all land plants, two of which were shown to have high sequence similarity to SK. We confirmed that one member possessed shikimate kinase activity, whereas the second member is inactive. These findings led us to identify MpSK (Mp3g21830) and infer the identity of MpSKL1 (Mp6g03600). Consistent with previous studies in Arabidopsis, disruption of MpSKL1 in Marchantia resulted in a pigment-defective phenotype with abnormal chloroplast morphology and thylakoid network organization. Given an early origin of SKL1 in land plant evolution, we investigated requisite structural modifications to an ancestral SK that led to the functional diversification of SKL1. We provided evidence that SKL1 displays an open and accessible substrate binding pocket, conferring its biological function for chloroplast biogenesis. Together, our results demonstrate that the acquisition of SKL1 corresponds with the emergence of terrestrial land plants and that this biological function is conserved across distant plant lineages.

生物化学工学
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