クロマチンリモデリングのメカニズムを解明:ISWIの動的構造を捕捉(Chen Zhucheng’s team captures dynamic conformations of ISWI during active nucleosome sliding, reveals mechanism of chromatin remodeling)

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2025-04-17 清華大学

清華大学の陳筑成教授の研究チームは、クロマチンリモデリング酵素「ISWI」がヌクレオソームを滑らせる過程における9種類の構造状態をクライオ電子顕微鏡で高解像度観察し、DNAトランスロケーションの詳細な機構を解明した。特にADP*状態では1塩基対のDNAバルジが形成され、ヒストンとの局所的な接触が破壊される。この発見は従来のモデルを覆し、ISWIがどのようにリンクDNAの長さを感知しながらクロマチン構造を調整するかを明らかにした。これにより、遺伝子発現調節や染色体構造の理解が進展し、疾患研究への応用も期待される。

クロマチンリモデリングのメカニズムを解明:ISWIの動的構造を捕捉(Chen Zhucheng’s team captures dynamic conformations of ISWI during active nucleosome sliding, reveals mechanism of chromatin remodeling)(A) Heatmap of DNA phosphate backbone displacement. Relative to the ATP state, both DNA strands in ADP* shift inward (arrow direction), and a 1-bp DNA bulge is stored at SHL2
(B) Structural comparison of SHL2 DNA in ATP (gray) and ADP* (colored) states.
(C) Cryo-EM density map of the DNA bulge in the ADP* state.
(D) Analysis of local histone-DNA interactions. ATP state (gray); ADP* state (colored). In ADP*, histone-DNA interactions are disrupted.

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活性型ATP加水分解におけるISWIによるクロマチンリモデリングの構造的洞察 Structural insights into chromatin remodeling by ISWI during active ATP hydrolysis

Youyang Sia, Han Pan, Kangjing Chen, and Zhucheng Chen
Science  Published:3 Apr 2025
DOI:https://doi.org/10.1126/science.adu5654

Abstract

Chromatin remodelers utilize the energy of adenosine triphosphate (ATP) hydrolysis to slide nucleosomes, regulating chromatin structure and gene activity in cells. In this work, we report structures of imitation switch (ISWI) bound to the nucleosome during active ATP hydrolysis and remodeling, revealing conformational transitions of the remodeling motor across the adenosine triphosphatase (ATPase) cycle. The DNA strands are distorted accordingly, showing one full base-pair bulge and a loss of histone contact at the site of motor binding in the adenosine diphosphate* b and Apo* states. We also identify several important elements for regulation of the remodeling activity. Notably, an enzyme conformation exiting the remodeling cycle reveals a linker DNA–sensing brake mechanism. Together, our findings elucidate a multistate model of ISWI action, providing a comprehensive mechanism of DNA translocation and regulation underpinning chromatin remodeling.

生物工学一般
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