ナノザイム近接標識法で細胞内相互作用とナノ粒子輸送経路を解明(Nanozyme Proximity Labeling Reveals Subcellular In Situ Interactomes and Trafficking Pathways of Nanoparticles)

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2026-06-30 中国科学院(CAS)

中国科学院杭州医学研究所(HIM)とマカオ大学の共同研究チームは、ナノ粒子が細胞内でどのようなタンパク質と相互作用し、どの経路で輸送されるかを、生きた細胞内で高精度に解析できる新手法「Nanozyme Proximity Labeling(NPL)」を開発した。従来の近接標識法は遺伝子改変を必要とするため適用範囲が限られていたが、本手法ではペルオキシダーゼ様活性を持つ酸化鉄(Fe₃O₄)ナノ粒子を利用し、過酸化水素で活性化することで、周辺タンパク質を約1分で標識できる。標識したタンパク質を質量分析で解析した結果、ミトコンドリア標的化ナノ粒子ではミトコンドリア関連タンパク質が約1.5倍多く検出され、標的部位への輸送に関わるタンパク質群も同定された。一方、非標的化ナノ粒子は主にリソソーム分解経路へ輸送されることが判明した。本技術は、ナノ粒子表面設計が細胞内運命に及ぼす影響を可視化するものであり、遺伝子改変を必要とせず、ドラッグデリバリーシステム(DDS)やナノ医薬品の高精度設計・最適化を支える有力な解析基盤となる。

<関連情報>

非遺伝子工学的手法によるナノザイム近接標識により、ナノ粒子の細胞内相互作用ネットワークと輸送経路が明らかになる Nongenetic engineering nanozyme proximity labeling reveals subcellular in situ interactomes and trafficking pathways of nanoparticles

Chao Jiang, Yiyang Fu, Baichuan Jin, +7 , and Yuan Liu
Proceedings of the National Academy of Sciences  Published:June 22, 2026
DOI:https://doi.org/10.1073/pnas.2521555123

Significance

Highly efficient delivery of nanomedicine hinges on deciphering nanoparticle (NP) interactions with biological systems. However, conventional methods disrupt native protein coronas and fail to capture in situ dynamic intracellular trafficking. Here, we introduce nanozyme proximity labeling (NPL), leveraging the peroxidase-like activity of iron oxide NPs to covalently tag proximal interacting proteins in situ. This genetic engineering-free strategy maps native NP-associated interactomes and trafficking pathways of NPs in live cells, capturing subcellular snapshots of dynamic interactions. Our study establishes NPL as a powerful platform to dissect nanomedicine–bio interfaces and will provide insights for the optimization of precision-targeted therapeutics.

Abstract

Elucidating the dynamic interactions between nanocarriers and cellular machinery is critical for advancing targeted nanomedicine. However, the optical microscopy imaging techniques can only provide a generalized view of nanomedicine localization. Proteomics approaches require cell lysis which disrupt native protein coronas during isolation, obscuring real-time intracellular trafficking mechanisms. Although proximity labeling enables in situ investigation of intracellular protein–protein interactions, it relies on genetically engineered enzyme fusion, thus limiting applicability across diverse systems. In this study, we report nanozyme proximity labeling (NPL), a genetic engineering-free strategy that harnesses the intrinsic peroxidase activity of Fe3O4 nanoparticles (NPs) to biotinylate proximal proteins within live cells. NPL achieves rapid biotinylation of NP-interacting proteins during intracellular transit. Using streptavidin pulldown and LC–MS/MS, we mapped high-fidelity in situ interactomes and suggested distinct trafficking pathways for mitochondrial-targeted Fe3O4@TPP NPs and nontargeted Fe3O4 NPs. Our NPL interrogates the native NP–protein corona–organelle interfaces, offering a generalizable platform to decipher subcellular targeting mechanisms and accelerate nanomedicine optimization.

生物化学工学
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