短い尾をもつツシマヤマネコをゲノム解析、イエネコとの近年の交雑を示す証拠は認められず ベンガルヤマネコ属で初となる短尾個体の報告 -臨床・ゲノムの両面から調査-

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2026-09-01 アニコム先進医療研究所株式会社,麻布大学,京都大学

短尾のツシマヤマネコについて、全ゲノム解析を用いてイエネコとの近年の交雑(遺伝子浸透)の有無を検証した研究。短尾個体はゲノム全体および母系のミトコンドリアDNAの双方でツシマヤマネコ集団に位置し、比較対象15頭を含め、近年のイエネコとの交雑を支持する証拠は確認されなかった。また、イエネコの短尾・カギ尾に関係するTBXT・HES7の既知変異も検出されず、短尾の原因は未解明である。本研究は、外見だけでは交雑を判断できないことを示し、希少野生動物の個体群管理におけるゲノム解析の有用性を示した。さらに、ベンガルヤマネコ属で初めて短尾個体を報告し、今後の遺伝的モニタリングや保全、生態系管理への活用が期待される。

短い尾をもつツシマヤマネコをゲノム解析、イエネコとの近年の交雑を示す証拠は認められず ベンガルヤマネコ属で初となる短尾個体の報告 -臨床・ゲノムの両面から調査-
対馬で撮影された短尾のツシマヤマネコ(左)と短尾のイエネコ(右)

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絶滅が危惧されるツシマヤマネコにおけるイエネコからの遺伝子浸透の疑いに関する全ゲノム規模の検証 Genome-wide assessment of suspected domestic cat introgression in the critically endangered Tsushima leopard cat

Yuki Matsumoto, Takuma Kaito, Koki Taniguchi, Daijiro Hata, Ryotaro Kaneko, Yui Habe, Keisuke Matsushita, Noriyoshi Akiyama, Yushi Koshida, Takae Shimizu-Matsumoto, Miho Inoue-Murayama, Hideyuki Ito
Global Ecology and Conservation  Available online: 5 August 2026
DOI:https://doi.org/10.1016/j.gecco.2026.e04365

Abstract

The Tsushima leopard cat, an insular felid endemic to the Tsushima Island, Japan, is listed as Critically Endangered in the Japanese Red List, with an estimated population size of approximately 100 individuals. Recently, a short-tailed individual was detected, raising concerns over its possible hybrid origins because such a phenotype has not been documented in leopard cats but is relatively common in domestic cats. However, whether this phenotype reflects domestic introgression or variation within the wild population remains unknown. We hypothesized that recent introgression would produce a detectable domestic ancestry signal in the focal individual. We therefore analyzed whole-genome data from the focal individual, 15 additional Tsushima leopard cats, five domestic cats from Tsushima Island, and four Amur leopard cats as continental wild references. Principal component analysis placed the focal individual within the Tsushima leopard cat cluster. ADMIXTURE assigned the focal individual almost entirely to the Tsushima leopard cat ancestry component, and neither f3 nor f4 admixture statistics supported recent domestic cat introgression. Mitochondrial DNA analysis showed that the focal individual shared a haplotype with the Tsushima leopard cats and was distinct from the domestic cat clade. The same genetic pattern was observed across the sampled population, with no evidence of substantial recent hybridization in the focal individual or nearby wildcats. To the best of our knowledge, this is the first report of a short-tailed individual in the genus Prionailurus. These findings highlight the value of genome-wide evaluation in resolving suspected hybrid cases in endangered wild felids.

細胞遺伝子工学
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