2024-04-08 オークリッジ国立研究所(ORNL)
<関連情報>
- https://www.ornl.gov/news/first-its-kind-integrated-dataset-enables-genes-ecosystems-research
- https://www.nature.com/articles/s41597-024-03069-7
遺伝子型と環境を超えたポピュラスの統合メタゲノム、メタボローム、トランスクリプトーム調査 An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
Christopher Schadt,Stanton Martin,Alyssa Carrell,Allison Fortner,Dan Hopp,Dan Jacobson,Dawn Klingeman,Brandon Kristy,Jana Phillips,Bryan Piatkowski,Mark A. Miller,Montana Smith,Sujay Patil,Mark Flynn,Shane Canon,Alicia Clum,Christopher J. Mungall,Christa Pennacchio,Benjamin Bowen,Katherine Louie,Trent Northen,Emiley A. Eloe-Fadrosh,Melanie A. Mayes,Wellington Muchero,… Mitchel Doktycz
Scientific Data Published:05 April 2024
DOI:https://doi.org/10.1038/s41597-024-03069-7
Abstract
Bridging molecular information to ecosystem-level processes would provide the capacity to understand system vulnerability and, potentially, a means for assessing ecosystem health. Here, we present an integrated dataset containing environmental and metagenomic information from plant-associated microbial communities, plant transcriptomics, plant and soil metabolomics, and soil chemistry and activity characterization measurements derived from the model tree species Populus trichocarpa. Soil, rhizosphere, root endosphere, and leaf samples were collected from 27 different P. trichocarpa genotypes grown in two different environments leading to an integrated dataset of 318 metagenomes, 98 plant transcriptomes, and 314 metabolomic profiles that are supported by diverse soil measurements. This expansive dataset will provide insights into causal linkages that relate genomic features and molecular level events to system-level properties and their environmental influences.
