超解像顕微鏡法が酵素複合体によるバイオマス分解をリアルタイム可視化(Super-Resolution Microscopy Provides Real-Time Picture of Bacteria Degrading Biomass With Enzyme Complexes)

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2026-05-11 ロッキーズ国立研究所(NLR)

米国ロッキーズ国立研究所(NLR)などの研究チームは、超解像顕微鏡と機械学習を組み合わせ、細菌Clostridium thermocellumが植物バイオマスを分解する際の酵素複合体「セルロソーム」の挙動をリアルタイムで可視化した。セルロソームはセルロース分解に特化した巨大タンパク質複合体で、次世代バイオ燃料生産への応用が期待されている。研究では、3,000万分の1メートル級の分解能を持つ超解像顕微鏡を用いて1万5,000枚以上の画像を取得し、機械学習クラスタリング解析によってセルロソーム分布を定量化した。その結果、細菌は植物バイオマス接触部位へセルロソームを集中配置し、成長段階に応じて動的に再配置していることが判明した。さらに、細胞表面からセルロソームが離脱する過程も確認された。本成果は、微生物による高効率バイオマス分解機構の理解を進展させ、低コストなバイオ燃料・化学品生産技術「統合型バイオプロセシング」の実現に貢献すると期待される。

超解像顕微鏡法が酵素複合体によるバイオマス分解をリアルタイム可視化(Super-Resolution Microscopy Provides Real-Time Picture of Bacteria Degrading Biomass With Enzyme Complexes)
Using a clustering algorithm and machine learning, a team of researchers analyzed 15,000 images of nearly 125 Clostridium thermocellum bacteria. The result is data-rich pictures showing the location of cellulosomes. Here, areas in yellow, green, and red show where cellulosomes are clustered on plant biomass particles (shaded in purple). The white rod-like shapes in the left photo are the bacteria. Figure by John Yarbrough, National Laboratory of the Rockies

<関連情報>

C. thermocellumによる分解―微生物を介したセルロソームの動的な再分配まで― Deconstruction by C. thermocellum—from microbe mediated to dynamic redistribution of cellulosomes

John M Yarbrough, N Hengge, Qi Xu, Samantha J Ziegler, Daehwan Chung, Shu Huang, Sarah Moraïs, Itzhak Mizrahi, View Edward A Bayer, Yannick J Bomble
Life Science Alliance  Published: 16 January 2026
DOI:10.26508/lsa.202503239

Abstract

Clostridium thermocellum is one of the most efficient microorganisms for the deconstruction of cellulosic biomass. To achieve this high level of cellulolytic activity, C. thermocellum uses large multienzyme complexes known as cellulosomes to break down complex polysaccharides, notably cellulose, found in plant cell walls. The attachment of bacterial cells to the nearby substrate via the cellulosome has been hypothesized to be the reason for this high efficiency. The region lying between the cell and the substrate has shown great variation and dynamics that are affected by the growth stage of cells and the substrate used for growth. Here, we used both super-resolution imaging and machine-learning approaches to study the distribution of C. thermocellum cellulosomes at different stages of growth. We show that C. thermocellum initially retains its cellulosomes primarily on the cell surface but then relocates large cellulosome clusters to the interface with biomass, therefore depleting its cell surface of cellulosomes. These results indicate dynamic redistribution of cellulosomes during growth, with a functional shift toward substrate-associated degradation later during growth on biomass.

生物化学工学
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