2026-05-12 オックスフォード大学
＜関連情報＞
- https://www.ox.ac.uk/news/2026-05-12-new-ai-model-predicts-how-cells-choose-their-fate
- https://www.cell.com/cell/fulltext/S0092-8674(26)00457-5
RegVelo：遺伝子制御情報に基づく単一細胞の動態 RegVelo: Gene-regulatory-informed dynamics of single cells
Weixu Wang ∙ Zhiyuan Hu ∙ Philipp Weiler, ∙ … ∙ Zhengyuan Xue ∙ Tatjana Sauka-Spengler ∙ Fabian J. Theis
Cell Published:May 11, 2026
DOI:https://doi.org/10.1016/j.cell.2026.04.022
Graphical abstract
Highlights
- RegVelo integrates scRNA-seq with prior GRN knowledge to infer regulatory dynamics
- Transcription is modeled as a regulated process to capture coupled gene dynamics
- Integration with CellRank enables in silico regulatory perturbation and fate prediction
- Modeling cranial neural crest development identifies elf1 as a regulator of pigment cell fate
Summary
Cell fate transitions are driven by regulatory circuitry, yet RNA velocity models cellular dynamics without explicitly accounting for gene regulatory interactions, limiting mechanistic insight. Conversely, gene regulatory network (GRN) inference methods largely neglect the dynamic nature of biological systems. To overcome this conceptual disconnect, we present RegVelo, a bottom-up, actionable, and interpretable deep learning framework that jointly models splicing kinetics and gene regulatory interactions. Across diverse biological systems, RegVelo provides reliable predictive power for terminal states, gene interactions, and perturbation simulations. By applying RegVelo to zebrafish neural crest development using full-length Smart-seq3 and shared gene expression and chromatin accessibility measurements, we delineate regulatory programs underlying fate specification. Guided by in silico perturbations and validated by CRISPR-Cas9 knockout and single-cell Perturb-seq, we establish tfec as an early driver and elf1 as a regulator of pigment cell fate. RegVelo establishes a quantitative framework for bridging gene regulation and cell fate decisions.
