新興SARS-CoV-2系統RE.2.2の特徴的な構造を解明(Study Reveals Distinct Structural Features of Emerging SARS-CoV-2 Sublineage RE.2.2)

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2026-09-10 中国科学院(CAS)

中国科学院微生物研究所(IMCAS)の研究チームは、感染拡大が進むSARS-CoV-2の新系統BA.3.2.2(RE.2.2)の構造・機能的特徴を明らかにした。研究では、表面プラズモン共鳴(SPR)とクライオ電子顕微鏡(cryo-EM)を用いて、ウイルスのスパイクタンパク質がヒトACE2受容体に高い親和性を示すことを確認。特にR493Q変異がACE2との新たな水素結合を形成し、受容体結合を強める主要因となっていた。また、RE.2.2は複数の抗体クラスを回避する一方、従来のオミクロン系統で活性を失っていた一部の広域中和抗体が再び強い中和能を示すなど、特徴的な免疫逃避特性を持つことが判明した。さらに、糖タンパク質解析とcryo-EMから、スパイクに新たなN型糖鎖付加部位N529を発見。この糖鎖はスパイクを閉じた構造で安定化し、高い受容体結合能とウイルス侵入制御の両立に関与すると考えられる。

新興SARS-CoV-2系統RE.2.2の特徴的な構造を解明(Study Reveals Distinct Structural Features of Emerging SARS-CoV-2 Sublineage RE.2.2)
Structural features, receptor recognition, and glycosylation profiling of SARS-CoV-2 sub-variant BA.3.2.2/RE.2.2. (Image by Prof. GAO George Fu’s group)

<関連情報>

受容体結合とスパイク糖鎖修飾の増加、急増するSARS-CoV-2亜型BA.3.2.2/RE.2.2/Cicadaの免疫回避機構の再構築 Increased receptor binding and spike glycosylation, remodeled immune escape of surging SARS-CoV-2 subvariant BA.3.2.2/RE.2.2/Cicada

Linjie Li, Linh Nguyen, Hao Qu, +8 , and George Fu Gao
Proceedings of the National Academy of Sciences  Published:September 8, 2026
DOI:https://doi.org/10.1073/pnas.2614163123

Abstract

SARS-CoV-2 continues to evolve. The subvariant BA.3.2 (Cicada), a derivative of the Omicron BA.3 subtype first detected in late 2024, harbors multiple spike protein mutations, ORF7 and ORF8 deletions, and has recently evolved sublineages (BA.3.2.1 and BA.3.2.2), rendering it a critical target for epidemiological surveillance. The BA.3.2.2 sublineage, represented by RE.2.2, shows a marked upward trend in late 2025. Using surface plasmon resonance, we found that RE.2.2’s spike (S) protein receptor-binding domain (RBD) exhibits relatively high affinity for human receptor angiotensin-converting enzyme 2, with structural analysis identifying the R493Q reverse mutation as the key determinant. Pseudovirus infection and antibody neutralization assays demonstrated that RE.2.2 exhibited a distinct neutralization profile compared to contemporaneous dominant subvariants. Notably, several antibodies that previously lacked neutralizing activity (e.g., S2K146 and L4.65) to other subvariants regained neutralizing potency against RE.2.2, which was associated with key mutations including G446D. Profiling of RE.2.2 RBD binding to ACE2 orthologs across species showed no significant difference in species tropism from the representative Omicron BA.1. Importantly, RE.2.2 exhibits the newly emerged N-linked glycosylation at spike protein N529 (absent in all other subvariants), a modification potentially associated with immune evasion or spike protein conformational dynamics. In addition, we corroborated the “O-follow-N” glycosylation observation as previously reported, where O-linked glycans preferentially localize near N-glycosylation sites, implying coordinated glycan organization as an extra layer of spike regulation. These findings illuminate the evolutionary characteristics, functional changes, and the constrained virus immune escape of BA.3.2.2 (RE.2.2), providing critical insights into antibody development and variant surveillance.

生物化学工学
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